Index

A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | Q | R | S | T | U | V | W

A

Adapter (class in signac.contrib.conversion)
AdapterMetaType (class in signac.contrib.conversion)
add_adapter_to_network() (in module signac.contrib.formats_network)
add_verbosity_action_argument() (in module signac.contrib.utility)
add_verbosity_argument() (in module signac.contrib.utility)
api
authenticate() (signac.common.connection.DBClientConnector method)
AuthenticationError

B

BaseCrawler (class in signac.contrib)
(class in signac.contrib.crawler)
BaseLink (class in signac.contrib.formats)
BasicFormat (class in signac.contrib.formats)
bcast() (signac.contrib.MPIPool method)
(signac.contrib.mpipool.MPIPool method)
build_job_search_index() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
build_job_statepoint_index() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
BytesToStrAdapter (class in signac.contrib.adapters)

C

calc_id() (in module signac.contrib.hashing)
check() (signac.common.configobj.SimpleVal method)
(signac.common.configobj.validate.Validator method)
check_and_fix_permissions() (in module signac.common.config)
check_credentials() (in module signac.common.host)
check_permissions() (in module signac.common.config)
clear() (signac.core.jsondict.JSonDict method)
client (signac.common.connection.DBClientConnector attribute)
close() (signac.contrib.formats.FileFormat method)
(signac.contrib.MPIPool method)
(signac.contrib.job.Job method)
(signac.contrib.mpipool.MPIPool method)
Config (class in signac.common.config)
config (signac.common.connection.DBClientConnector attribute)
(signac.Project attribute)
(signac.contrib.Project attribute)
(signac.contrib.project.Project attribute)
config() (signac.contrib.filesystems.GridFS method)
(signac.contrib.filesystems.LocalFS method)
ConfigError, [1]
ConfigObj (class in signac.common.configobj)
ConfigObjError
ConfigspecError
connect() (signac.common.connection.DBClientConnector method)
ConnectionFailure
ConversionError
ConversionNetwork (class in signac.contrib.formats_network)
convert() (in module signac.contrib.formats_network)
(signac.contrib.adapters.BytesToStrAdapter method)
(signac.contrib.adapters.FileToBytesAdapter method)
(signac.contrib.adapters.StrToBytesAdapter method)
(signac.contrib.conversion.Adapter method)
(signac.contrib.formats_network.ConversionNetwork method)
(signac.contrib.formats_network.Converter method)
converted() (in module signac.contrib.formats_network)
(signac.contrib.formats_network.ConversionNetwork method)
Converter (class in signac.contrib.formats_network)
crawl() (signac.contrib.BaseCrawler method)
(signac.contrib.RegexFileCrawler method)
(signac.contrib.SignacProjectCrawler method)
(signac.contrib.crawler.BaseCrawler method)
(signac.contrib.crawler.RegexFileCrawler method)
(signac.contrib.crawler.SignacProjectCrawler method)
create_access_module() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
create_linked_view() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
create_view() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)

D

data (signac.contrib.formats.BaseLink attribute)
(signac.contrib.formats.FileFormat attribute)
DatabaseError
DBClientConnector (class in signac.common.connection)
define() (signac.contrib.crawler.RegexFileCrawler class method)
(signac.contrib.RegexFileCrawler class method)
definitions (signac.contrib.crawler.RegexFileCrawler attribute)
(signac.contrib.RegexFileCrawler attribute)
docs_from_file() (signac.contrib.BaseCrawler method)
(signac.contrib.JSONCrawler method)
(signac.contrib.MasterCrawler method)
(signac.contrib.RegexFileCrawler method)
(signac.contrib.crawler.BaseCrawler method)
(signac.contrib.crawler.JSONCrawler method)
(signac.contrib.crawler.MasterCrawler method)
(signac.contrib.crawler.RegexFileCrawler method)
docs_from_json() (signac.contrib.crawler.JSONCrawler method)
(signac.contrib.JSONCrawler method)
document (signac.contrib.job.Job attribute)
dottedQuadToNum() (in module signac.common.configobj.validate)
dump_statepoints() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
DuplicateError

E

EmptyIsTrue (class in signac.contrib.utility)
encoding (signac.common.config.Config attribute)
(signac.contrib.JSONCrawler attribute)
(signac.contrib.SignacProjectCrawler attribute)
(signac.contrib.crawler.JSONCrawler attribute)
(signac.contrib.crawler.SignacProjectCrawler attribute)
Error
expects (signac.contrib.adapters.BytesToStrAdapter attribute)
(signac.contrib.adapters.FileToBytesAdapter attribute)
(signac.contrib.adapters.StrToBytesAdapter attribute)
(signac.contrib.conversion.Adapter attribute)
export() (in module signac.contrib)
(in module signac.contrib.crawler)
export_pymongo() (in module signac.contrib)
(in module signac.contrib.crawler)

F

fetch() (in module signac)
(in module signac.contrib)
(in module signac.contrib.crawler)
(signac.contrib.BaseCrawler method)
(signac.contrib.RegexFileCrawler method)
(signac.contrib.crawler.BaseCrawler method)
(signac.contrib.crawler.RegexFileCrawler method)
(signac.contrib.formats.BaseLink method)
(signac.contrib.formats.FileLink method)
fetch_one() (in module signac)
(in module signac.contrib)
(in module signac.contrib.crawler)
fetched() (in module signac.contrib)
(in module signac.contrib.crawler)
FileExistsError (signac.contrib.filesystems.GridFS attribute)
(signac.contrib.filesystems.LocalFS attribute)
FileFormat (class in signac.contrib.formats)
FileLink (class in signac.contrib.formats)
FileNotFoundError (signac.contrib.filesystems.GridFS attribute)
(signac.contrib.filesystems.LocalFS attribute)
filesystems_from_config() (in module signac.contrib.filesystems)
filesystems_from_configs() (in module signac.contrib.filesystems)
FileToBytesAdapter (class in signac.contrib.adapters)
find_job_documents() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
find_job_ids() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.JobSearchIndex method)
(signac.contrib.project.Project method)
find_jobs() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
find_statepoints() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
find_variable_parameters() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
fix_permissions() (in module signac.common.config)
flatten_errors() (in module signac.common.configobj)
fn() (signac.contrib.job.Job method)
FN_ACCESS_MODULE (signac.contrib.crawler.MasterCrawler attribute)
(signac.contrib.MasterCrawler attribute)
fn_job_document (signac.contrib.crawler.SignacProjectCrawler attribute)
(signac.contrib.SignacProjectCrawler attribute)
FN_MANIFEST (signac.contrib.job.Job attribute)
fn_regex (signac.contrib.crawler.JSONCrawler attribute)
(signac.contrib.JSONCrawler attribute)
fn_statepoint (signac.contrib.crawler.SignacProjectCrawler attribute)
(signac.contrib.SignacProjectCrawler attribute)

G

get() (signac.contrib.filesystems.GridFS method)
(signac.contrib.filesystems.LocalFS method)
(signac.core.jsondict.JSonDict method)
get_client() (in module signac.common.host)
get_config() (in module signac.common.config)
get_connector() (in module signac.common.host)
get_conversion_network() (in module signac.contrib)
(in module signac.contrib.formats_network)
get_converters() (in module signac.contrib.formats_network)
get_credentials() (in module signac.common.host)
get_database() (in module signac)
(in module signac.common.host)
(in module signac.db.database)
get_default_host() (in module signac.common.host)
get_default_value() (signac.common.configobj.validate.Validator method)
get_extra_values() (in module signac.common.configobj)
get_formats_network() (in module signac.contrib)
(in module signac.contrib.formats_network)
get_host_config() (in module signac.common.host)
get_id() (signac.contrib.job.Job method)
(signac.Project method)
(signac.contrib.Project method)
(signac.contrib.project.Project method)
get_project() (in module signac)
(in module signac.contrib)
(in module signac.contrib.project)
(signac.Project class method)
(signac.contrib.Project class method)
(signac.contrib.project.Project class method)
get_statepoint() (signac.contrib.crawler.SignacProjectCrawler method)
(signac.Project method)
(signac.contrib.Project method)
(signac.contrib.SignacProjectCrawler method)
(signac.contrib.project.Project method)
get_subject_from_certificate() (in module signac.common.connection)
(in module signac.core.utility)
get_validator() (in module signac.common.validate)
Graphical User Interface (GUI)
GridFS (class in signac.contrib.filesystems)
gridfs (signac.contrib.filesystems.GridFS attribute)
guide

H

has_password() (signac.common.config.Config method)
host (signac.common.connection.DBClientConnector attribute)

I

index() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
init() (signac.contrib.job.Job method)
init_project() (in module signac)
(in module signac.contrib)
(in module signac.contrib.project)
(signac.Project class method)
(signac.contrib.Project class method)
(signac.contrib.project.Project class method)
installation
InterpolationError
InterpolationLoopError
is_bool_list() (in module signac.common.configobj.validate)
is_boolean() (in module signac.common.configobj.validate)
is_float() (in module signac.common.configobj.validate)
is_float_list() (in module signac.common.configobj.validate)
is_int_list() (in module signac.common.configobj.validate)
is_integer() (in module signac.common.configobj.validate)
is_ip_addr() (in module signac.common.configobj.validate)
is_ip_addr_list() (in module signac.common.configobj.validate)
is_list() (in module signac.common.configobj.validate)
is_master() (signac.contrib.MPIPool method)
(signac.contrib.mpipool.MPIPool method)
is_mixed_list() (in module signac.common.configobj.validate)
is_option() (in module signac.common.configobj.validate)
is_string() (in module signac.common.configobj.validate)
is_string_list() (in module signac.common.configobj.validate)
is_tuple() (in module signac.common.configobj.validate)
isfile() (signac.contrib.job.Job method)

J

Job (class in signac.contrib.job)
JobSearchIndex (class in signac.contrib.project)
JSONCrawler (class in signac.contrib)
(class in signac.contrib.crawler)
JSonDict (class in signac.core.jsondict)

L

linked_format (signac.contrib.formats.BaseLink attribute)
LinkError
load() (signac.core.jsondict.JSonDict method)
load_config() (in module signac.common.config)
LocalFS (class in signac.contrib.filesystems)
logout() (signac.common.connection.DBClientConnector method)

M

make_adapter() (in module signac.contrib.conversion)
make_uri() (in module signac.common.host)
map() (signac.contrib.MPIPool method)
(signac.contrib.mpipool.MPIPool method)
MasterCrawler (class in signac.contrib)
(class in signac.contrib.crawler)
MissingInterpolationOption
MongoDB database backend
mongodb_uri() (in module signac.common.validate)
MPIPool (class in signac.contrib)
(class in signac.contrib.mpipool)

N

name (signac.contrib.filesystems.GridFS attribute)
(signac.contrib.filesystems.LocalFS attribute)
NestingError
new_file() (signac.contrib.filesystems.GridFS method)
(signac.contrib.filesystems.LocalFS method)
NoConversionPathError
num_jobs() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
numToDottedQuad() (in module signac.common.configobj.validate)

O

open() (signac.contrib.job.Job method)
open_job() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
overview

P

parse_version() (in module signac.core.utility)
ParseError
password() (in module signac.common.validate)
PermissionsError
process() (signac.contrib.BaseCrawler method)
(signac.contrib.RegexFileCrawler method)
(signac.contrib.SignacProjectCrawler method)
(signac.contrib.crawler.BaseCrawler method)
(signac.contrib.crawler.RegexFileCrawler method)
(signac.contrib.crawler.SignacProjectCrawler method)
Project (class in signac)
(class in signac.contrib)
(class in signac.contrib.project)
prompt_new_password() (in module signac.contrib.utility)
prompt_password() (in module signac.contrib.utility)

Q

query_yes_no() (in module signac.contrib.utility)
quickreference

R

raise_unsupported_auth_mechanism() (in module signac.common.connection)
read() (signac.contrib.formats.FileFormat method)
read_config_file() (in module signac.common.config)
read_statepoints() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
RegexFileCrawler (class in signac.contrib)
(class in signac.contrib.crawler)
registry (signac.contrib.conversion.Adapter attribute)
(signac.contrib.formats.BasicFormat attribute)
reload() (signac.common.configobj.ConfigObj method)
ReloadError
remove() (signac.contrib.job.Job method)
repair() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
RepeatSectionError
reset() (signac.common.configobj.ConfigObj method)
reset_statepoint() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
returns (signac.contrib.adapters.BytesToStrAdapter attribute)
(signac.contrib.adapters.FileToBytesAdapter attribute)
(signac.contrib.adapters.StrToBytesAdapter attribute)
(signac.contrib.conversion.Adapter attribute)
root (signac.contrib.formats.FileLink attribute)
root_directory() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)

S

save() (signac.core.jsondict.JSonDict method)
search_standard_dirs() (in module signac.common.config)
search_tree() (in module signac.common.config)
seek() (signac.contrib.formats.FileFormat method)
set_root() (signac.contrib.formats.FileLink class method)
set_verbosity_level() (in module signac.contrib.utility)
signac (module), [1]
signac.common (module)
signac.common.config (module)
signac.common.configobj (module)
signac.common.configobj.validate (module)
signac.common.connection (module)
signac.common.errors (module)
signac.common.host (module)
signac.common.validate (module)
signac.contrib (module)
signac.contrib.adapters (module)
signac.contrib.conversion (module)
signac.contrib.crawler (module)
signac.contrib.errors (module)
signac.contrib.filesystems (module)
signac.contrib.formats (module)
signac.contrib.formats_network (module)
signac.contrib.hashing (module)
signac.contrib.job (module)
signac.contrib.mpipool (module)
signac.contrib.project (module)
signac.contrib.utility (module)
signac.core (module)
signac.core.jsondict (module)
signac.core.utility (module)
signac.db.database (module)
signac_id_alias (signac.contrib.crawler.SignacProjectCrawler attribute)
(signac.contrib.SignacProjectCrawler attribute)
SignacProjectCrawler (class in signac.contrib)
(class in signac.contrib.crawler)
SimpleVal (class in signac.common.configobj)
SmartFormatter (class in signac.contrib.utility)
statepoint() (signac.contrib.job.Job method)
statepoint_index (signac.contrib.crawler.SignacProjectCrawler attribute)
(signac.contrib.SignacProjectCrawler attribute)
StrToBytesAdapter (class in signac.contrib.adapters)

T

tags (signac.contrib.BaseCrawler attribute)
(signac.contrib.crawler.BaseCrawler attribute)
tell() (signac.contrib.formats.FileFormat method)
TextFile (class in signac.contrib.formats)
to_tuple() (signac.core.utility.Version method)
tutorial

U

UnknownType
UnreprError
update() (signac.core.jsondict.JSonDict method)
update_statepoint() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)
url (signac.contrib.formats.BaseLink attribute)

V

validate() (signac.common.configobj.ConfigObj method)
ValidateError
Validator (class in signac.common.configobj.validate)
VdtMissingValue
VdtParamError
VdtTypeError
VdtUnknownCheckError
VdtValueError
VdtValueTooBigError
VdtValueTooLongError
VdtValueTooShortError
VdtValueTooSmallError
VerbosityAction (class in signac.contrib.utility)
VerbosityLoggingConfigAction (class in signac.contrib.utility)
verify() (signac.common.config.Config method)
Version (class in signac.core.utility)
version() (in module signac.common.validate)

W

wait() (signac.contrib.MPIPool method)
(signac.contrib.mpipool.MPIPool method)
walkdepth() (in module signac.contrib.utility)
weight (signac.contrib.conversion.Adapter attribute)
workspace() (signac.contrib.job.Job method)
(signac.Project method)
(signac.contrib.Project method)
(signac.contrib.project.Project method)
write() (signac.common.config.Config method)
(signac.common.configobj.ConfigObj method)
write_statepoints() (signac.contrib.Project method)
(signac.Project method)
(signac.contrib.project.Project method)